PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11740.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 313aa    MW: 36077.6 Da    PI: 6.6979
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11740.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57357.44e-18691797
                   DUF573  7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93
                             ws+eDei++L+G+++   ktgks   d  a+ye +k+s++ + +++ +l +Kir L++K+ kk  k    +  + s++h+q+ f ls 
  Sme2.5_11740.1_g00001.1  6 WSKEDEITILKGVVNL--KTGKSKRIDYVALYESIKQSLDREsATQVDLQKKIRCLREKYYKKNLK----RARNPSTQHEQELFYLSD 87
                             ***************9..899999***************87527889*************999888....55667899********** PP

                   DUF573 94 kiWg 97
                             ++Wg
  Sme2.5_11740.1_g00001.1 88 RVWG 91
                             ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-16691IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAYSGWSKED EITILKGVVN LKTGKSKRID YVALYESIKQ SLDRESATQV DLQKKIRCLR  60
EKYYKKNLKR ARNPSTQHEQ ELFYLSDRVW GDHHDIYPQS DGVWGEHHDI YPQSDRVWGE  120
HHDIYPHRDR VWGEHHDIYP HLTISSSSYI RPLDMEATDK ILVGDLGLAL TTISRNHSNP  180
LQAALQQYKL VSQSLTTRKA YGNQILEALI TPEKEGHSEL EEQKIARSYF NTKIQHAQLV  240
SDAYHASHGF DLEMAILSIV YTNQIKVMPN LSAETVLVIN NLFAAYYLLC VWQQASMPDS  300
LEETPSLHCS TTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315532.16e-73PREDICTED: uncharacterized protein LOC101248824 isoform X3
TrEMBLK4B4D16e-72K4B4D1_SOLLC; Peptidyl-prolyl cis-trans isomerase
STRINGSolyc02g005290.2.12e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1376078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-11DNA-binding storekeeper protein-related transcriptional regulator